PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03678.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 311aa    MW: 35349.3 Da    PI: 4.9501
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03678.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-1995181183
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+l++sdv++++r++lpkk ae+h    ++k  e++ l +ed++g  +W++k+++  +++s++yvl+ ++ +Fv+ ++++ gDf
  Rsa1.0_03678.1_g00002.1  95 FQKELKNSDVSSLRRMILPKKAAEAHlpalEYK--EGIPLEMEDLDGlHVWTFKYRFwpNNNSRMYVLE-NTGDFVNTHRVQPGDF 177
                              99**************************66555..6777********9*******9989999999***9.**************** PP

                              EEEE CS
                       B3  80 vvFk 83 
                              ++++
  Rsa1.0_03678.1_g00002.1 178 IILY 181
                              **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2691199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2193192IPR015300DNA-binding pseudobarrel domain
CDDcd100176.98E-2693181No hitNo description
PROSITE profilePS508639.1595197IPR003340B3 DNA binding domain
SMARTSM010191.4E-1895197IPR003340B3 DNA binding domain
PfamPF023624.8E-1695181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDEAGYAHDV ETKVSALMAS VDHLPMFGSG SGHDNGYLSA SVPLLGVNWK KRRMPRQRRS  60
SSSFNLLSFP TLPPSHVPTH LPARKIDTGK LRFLFQKELK NSDVSSLRRM ILPKKAAEAH  120
LPALEYKEGI PLEMEDLDGL HVWTFKYRFW PNNNSRMYVL ENTGDFVNTH RVQPGDFIIL  180
YQYLDSYNYV IQAKKAYEEE EDITNVEEDD VYTNLTRIEN TVLNDRPLQD YNHHYNNNSG  240
KCSYVYPAFD DVTATTTNAP FVYDTTALSS NDTPLDYLGG LATTTSTNSY YSEFGPFEGF  300
GSVENISLDD F
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647514.10.0PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW311e-150FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A078FKZ10.0A0A078FKZ1_BRANA; BnaA06g32660D protein
STRINGBra025229.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71382638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-129B3 family protein